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Subject: Basic Sciences

  • What is Next Generation Sequencing (NGS)?

    • To speed up testing as well as improve the accuracy of testing COVID-19, the CSIR is working on developing “mega labs” where large machines, called Next Generation Sequencing machines (NGS), will be used for sequencing human genomes.
    • It is repurposed to sequence 1,500-3,000 viral genomes at a go for detecting the SARS-CoV-2 novel coronavirus.

    Try this PYQ:

    What is Cas9 protein that is often mentioned in news? (CSP 2018)

    (a) A molecular scissors used in targeted gene editing

    (b) A biosensor used in the accurate detection of pathogens in patients

    (c) A gene that makes plants pest-resistant

    (d) A herbicidal substance synthesized in genetically modified crops

    What is NGS?

    • DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA.
    • It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, cytosine, and thymine.
    • The advent of rapid DNA sequencing methods has greatly accelerated biological and medical research and discovery.
    • Next-generation sequencing (NGS), also known as high-throughput sequencing, is the catch-all term used to describe a number of different modern sequencing technologies.
    • These technologies allow for sequencing of DNA and RNA much more quickly and cheaply than the previously used Sanger sequencing, and as such revolutionized the study of genomics and molecular biology.

    Benefits

    • The genome sequencing machines can substantially detect the possible presence of the virus even in several instances where the traditional RT-PCR tests miss out on them.
    • This is primarily because the RT-PCR test identifies the SARS-CoV-2 virus by exploring only specific sections of the virus.
    • Having an edge, the genome method can read a bigger chunk of the virus genome and thereby provide more certainty that the virus in question is indeed the particular coronavirus of interest.
    • It can also trace the evolutionary history of the virus and track mutations more reliably.

    Back2Basics:

    PCR Test for Diagnosis of the COVID-19

  • abscisic acid (ABA)

    A team of researchers at the Indian Institute of Science Education and Research (IISER), Bhopal, has conducted a study on seed germination that could have a major impact on agriculture.

    What is the study about?

    • The study aims to determine the optimum timing of seed germination and thus ensure high plant yields.
    • It focused on the interplay between plant hormones like abscisic acid (ABA) which inhibit the sprouting of the seed and environmental cues like light (which promotes the sprouting process) and darkness.

    Note the following plant hormones and their functions:

    Hormone

    Function

    Ethylene Fruit ripening and abscission
    Gibberellins Break the dormancy of seeds and buds; promote growth
    Cytokinins Promote cell division; prevent senescence
    Abscisic Acid Close the stomata; maintain dormancy
    Auxins Involved in tropisms and apical dominance

    What is Abscisic Acid? 

    • Humans have glands that secrete hormones at different times to stimulate body processes such as growth, development, and the breaking down of sugars.  
    • Plants also have hormones that stimulate processes that are necessary for them to live.  
    • Abscisic acid is a plant hormone involved in many developmental plant processes, such as dormancy and environmental stress response.  
    • Abscisic acid is produced in the roots of the plant as well as the terminal buds at the top of the plant. 

    Function of Abscisic Acid 

    Abscisic acid is involved in several plant functions.  

    • Plants have openings on the bottom side of their leaves, known as stomata. Stomata take in carbon dioxide and regulate water content. Abscisic acid has been found to function in the closing of these stomata during times when the plant does not require as much carbon dioxide or during times of drought when the plant cannot afford to lose much water through transpiration. 
    • One of the crucial functions of abscisic acid is to inhibit seed germination. Abscisic acid has been found to stop a seed from immediately germinating once it has been placed in the soil. It actually causes the seed to enter a period of dormancy.  
    • This is of great benefit to the plants because most seeds are formed at the end of the growing season, when conditions would not be favorable for a new plant to sprout. The abscisic acid causes the seed to wait until the time when conditions are more favorable to grow. This ensures greater success in the plant’s ability to grow and reproduce successfully. 
    • ABA functions in many plant developmental processes, including seed and bud dormancy, the control of organ size and stomatal closure. It is especially important for plants in the response to environmental stresses, including drought, soil salinity, cold tolerance, freezing tolerance, heat stress and heavy metal ion tolerance.

  • [pib] Krishi Megh: A Cloud-based Data Recovery Centre

    Union Minister of Agriculture & Farmers’ Welfare has launched the Krishi Megh Data Recovery Centre.

    Do not get confused with the name ‘Krishi Megh’. One might mistakenly relate it to some weather forecasting tool of the Indian Meteorological Department.

    Krishi Megh

    • The Krishi Megh has been set up at National Academy of Agricultural Research Management (NAARM), Hyderabad.
    • It has been set up under the National Agricultural Higher Education Project (NAHEP), funded by both the government and World Bank.
    • It has been built to mitigate the risk, enhance the quality, availability and accessibility of e-governance, research, extension and education in the field of agriculture in India.
    • Currently, the main data centre of the Indian Council of Agricultural Research (ICAR) is at the Indian Agricultural Statistics Research Institute (IASRI) in New Delhi.

    Back2Basics: Cloud Storage

    • It is a cloud computing model that stores data on the Internet through a cloud computing provider who manages and operates data storage as a service.
    • It is delivered on demand with just-in-time capacity and costs, and eliminates buying and managing your own data storage infrastructure.
    • It gives agility, global scale and durability, with “anytime, anywhere” data access.
  • What is Pyrolysis?

    Plastic from used personal protective equipment (PPE) can be transformed into renewable liquid fuels using chemical a process called pyrolysis, says a new study.

    Try this PYQ:

    Q.In the context of which one of the following are the terms ‘pyrolysis and plasma gasification’ mentioned? (CSP 2019)

    (a) Extraction of rare earth elements

    (b) Natural gas extraction technologies

    (c) Hydrogen fuel-based automobiles

    (d) Waste-to-energy technologies

    What is Pyrolysis?

    • Pyrolysis is the thermal decomposition of materials at elevated temperatures in an inert atmosphere.
    • It involves a change in chemical composition. The word is coined from the Greek-derived elements pyro “fire” and lysis “separating”.
    • It is most commonly used in the treatment of organic materials. It is one of the processes involved in charring wood.
    • It is considered as the first step in the processes of gasification or combustion.

    How does it work?

    • In general, pyrolysis of organic substances produces volatile products and leaves a solid residue enriched in carbon, char.
    • Extreme pyrolysis, which leaves mostly carbon as the residue, is called carbonization.
    • The process is used heavily in the chemical industry, for example, to produce ethylene, many forms of carbon, and other chemicals from petroleum, coal, and even wood, to produce coke from coal.

    Applications

    • Aspirational applications of pyrolysis would convert biomass into syngas and biochar, waste plastics back into usable oil, or waste into safely disposable substances.

    Limitations and Concerns

    • The technology requires drying of soil prior to treatment.
    • Limited performance data are available for systems treating hazardous wastes containing polychlorinated biphenyls (PCBs), dioxins, and other organics.
    • There is concern that systems that destroy chlorinated organic molecules by heat have the potential to create products of incomplete combustion, including dioxins and furans.
    • These compounds are extremely toxic in the parts per trillion range.
    • The molten salt is usually recycled in the reactor chamber. However, depending on the waste treated (especially inorganics) and the amount of ash, spent molten salt may be hazardous and require special care in disposal.
    • Pyrolysis is not effective in either destroying or physically separating inorganics from the contaminated medium.
    • Volatile metals may be removed as a result of the higher temperatures associated with the process, but they are not destroyed.
    • When the off-gases are cooled, liquids condense, producing an oil/tar residue and contaminated water.
    • These oils and tars may be hazardous wastes, requiring proper treatment, storage, and disposal.
  • What are Time Capsules?

    Ahead of the laying of the foundation stone for a temple, claims and denials have emerged about plans to put in a time capsule, or ‘Kaal Patra’.

    Do you know?

    A rubidium standard or rubidium atomic clock is the most inexpensive, compact, and widely produced atomic clock, used to control the frequency of television stations, cell phone base stations, in test equipment, and global navigation satellite systems like GPS.

    What is a Time Capsule?

    • It is a container of any size or shape, which accommodates documents, photos and artefacts typical of the current era and is buried underground, for future generations to unearth.
    • The time capsule requires special engineering so that the contents don’t decay, even if pulled out after a century.
    • Material such as aluminium and stainless steel are used for the encasing, and documents are often reproduced on acid-free paper.
    • While the term “time capsule” was coined in the 20th century, among the earliest examples of one dates back to 1777, found by historians inside the statue of Jesus Christ in Spain during its restoration.

    There’s a global society:

    International Time Capsule Society

    • The International Time Capsule Society (ITCS), based in the US and formed in 1990, is now defunct but continues estimating the number of time capsules in the world.
    • As per its database, there are “10,000-15,000 times capsules worldwide”.

    Are there any time capsules in India?

    • There have been a number of prominent examples.
    • One time capsule, outside the Red Fort and placed underground in 1972 by then PM Indira Gandhi, was dug out by the subsequent government.
    • Other time capsules are at a school in Mumbai, IIT-Kanpur, LPU in Jalandhar, and Mahatma Mandir in Gandhinagar.
    • The Red Fort time capsule was supposed to be dug out after 1,000 years.

    Significance of time capsules

    • Historians often criticize the idea of being motivated.
    • This exercise is inevitably a subjective exercise, geared towards glorification not to construct the real picture.
    • All historians look at this time capsule exercise with suspicion.
    • It’s not a valid historical method — who decides what matter, what artefacts, written documents are going into it?
  • What is Black Rain?

    Ahead of the 75th anniversary of Hiroshima, a Japanese court has recognised 84 survivors of the post-nuclear explosion “black rain” as the atomic bomb survivors. This would enable them to avail free medical benefits.

    Try this question from CSP 2011:

    Q.Acid rain is caused by the pollution of the environment by:

    (a) Carbon dioxide and nitrogen

    (b) Carbon monoxide and carbon dioxide

    (c) Ozone and carbon dioxide

    (d) Nitrous oxide and Sulphur dioxide

    What is Black Rain?

    • An estimated 69 per cent of the buildings in Hiroshima were destroyed by the atomic bomb.
    • The debris and soot from this, mixed with the radioactive fallout from the bomb, raised high into the atmosphere in the form of a mushroom cloud.
    • This material combined with the vapour in the atmosphere and came down as dark drops of liquid that have been called black rain.
    • Survivors of the black rain described it as consisting of large, greasy drops that are much heavier than normal raindrops.
    • It is full of highly radioactive material, and studies have shown that exposure to it can result in serious illnesses.

    What was its effect?

    • A study conducted in the year 1945 itself showed that black rain had come down as far as 29 km away from ground zero.
    • The rain contaminated everything it came in contact with, and dead fish were reported floating in water bodies and severely ill cattle were seen lying in the fields.
    • It has caused acute radiation symptoms (ARS) in many who were exposed to it, with reports of people suffering from nausea and diarrhoea for weeks.
    • Other ARS include fever, sore throat and loss of hair. Over time, many people who were exposed to black rain have developed cancer.
  • Global Forest Resources Assessment (FRA)

    India has ranked third among the top 10 countries that have gained in forest areas in the last decade a/c to the latest Global Forest Resources Assessment (FRA).

    Possible prelim question:

    Q.The Global Forest Resources Assessment Report recently seen in news is published by-

    a) UN-FAO

    b) UN Forum on Forests

    c) International Union of Forest Research Organizations

    d) None of these

    India gains in forest cover

    • The top 10 countries that have recorded the maximum average annual net gains in a forest area during 2010-2020 are China, Australia, India, Chile, Vietnam, Turkey, the US, France, Italy and Romania.
    • India accounts for two per cent of total global forest area.
    • Globally, 12.5 million people were employed in the forestry sector. Out of this, India accounted for 6.23 million, or nearly 50 per cent.

    Global prospects

    • The Asian continent reported the highest net gain in a forest area in 2010-2020, according to the report.
    • It recorded a 1.17 million hectares (ha) per year net increase in forests in the last decade.
    • However, the South Asia sub-region reported net forest losses during 1990-2020.
    • But, this decline would have been much higher without the net gain in India’s forest during this period, according to FRA 2020.

    How did India gain?

    • The FRA 2020 has credited the government’s Joint Forest Management programme for the significant increase in community-managed forest areas in the Asian continent.
    • The forest area managed by local, tribal and indigenous communities in India increased from zero in 1990 to about 25 million ha in 2015, the assessment said.
    • India has been taking up massive afforestation and plantation schemes.

    About Global Forest Resources Assessment

    • The Global Forest Resources Assessment (FRA) reports on the status and trends of the world’s forest resources.
    • It is led by the Forestry Department of the Food and Agriculture Organization of the UN.
    • It reports the extent of the world’s forest area as well as other variables, including land tenure and access rights, sustainable forest management (SFM), forest conservation, and sustainable use.

    Back2Basics: Defining forests as per FRA

    • The definition excludes tree stands in agricultural production systems, such as fruit tree plantations, oil palm plantations, olive orchards, and agroforestry systems when crops are grown under tree cover.

    The FAO definition of a forest includes:

    • land spanning more than 0.5 hectares with trees higher than 5 meters and a canopy cover of more than 10 per cent, or trees able to reach these thresholds in situ
    • does not include land that is predominantly under agricultural or urban land use
  • [pib] Knowledge Resource Centre Network (KRCNet)

    The Ministry of Earth Sciences (MoES) has planned to develop a World-Class Knowledge Resource Centre Network (KRCNet).

    Note the salient features of the KRCNet. UPSC may puzzle you asking which of these is/are not a feature of KRCNet.

    KRCNet Portal

    • KRCs will be connected with each other and integrated into the KRCNet portal.
    • It will be a single point entry to the intellectual world of the Ministry of Earth Sciences (MoES).
    • The resources and services of the MoES system will be accessible 24X7 through a one-point dynamic, updated and integrated on this portal.

    Salient features of the KRCNet:

    • Establish a Total Quality Management (TQM) system by securing ISO certification for documenting MoES knowledge resources, its maintenance, easy retrieval and dissemination.
    • Collect, collate, analyze, index, store and disseminate the intellectual resources, products and project outputs available in MoES headquarter and its institutes.
    • Develop and maintain an up-to-date meta-data of the print & digital resources available in MoES headquarter and MoES institutes, including MoES services.
    • Provide 24X7 accesses to the subscribed knowledge contents through the KRCNet portal.
    • Application of information-analytical tools & techniques like bibliometrics, scientometrics, big-data analytics, social media analytics etc., for policy formulation, report preparation and information dissemination.
    • Periodically organize training workshops to popularize the usage of electronic journals, databases, digital products, data analytics etc.
  • Rosalind Franklin: the unsung heroine of DNA

    The famous British scientist and virologist Rosalind Franklin is remembered across the world on her birth centenary who worked to construct the double-helix structure of DNA.

    Try this PYQ from CSP 2019:

    DNA/RNA has been an all-time favourite of UPSC!

    Q.‘RNA interference (RNAi)’ technology has gained popularity in the last few years. Why?

    1. It is used in developing gene-silencing therapies.
    2. It can be used in developing therapies for the treatment of cancer.
    3. It can be used to develop hormone replacement therapies.
    4. It can be used to produce crop plants that are resistant to viral pathogens.

    Select the correct answer using the code given below:

    (a) 1, 2 and 4

    (b) 2 and 3

    (c) 1 and 3

    (d) 1 and 4 only

    Rosalind Franklin (1920-1958)

    • She was an English chemist and X-ray crystallographer whose work was central to the understanding of the molecular structures of DNA (deoxyribonucleic acid), RNA (ribonucleic acid), viruses, coal, and graphite.
    • Although her works on coal and viruses were appreciated in her lifetime, her contributions to the discovery of the structure of DNA were largely recognised posthumously.

    DNA breakthrough

    • In 1952, Raymond Gosling, a graduate student at King’s College London, took a historic X-ray photograph under Franklin’s supervision.
    • Photo 51, as it is called, demonstrates the now-familiar, double-helix structure of DNA.

    Why is she remembered now?

    • The world is currently gripped in a pandemic, and her pioneering research in virology provided a crucial early step in the search for cures, vaccinations and tests.
    • During the Second World War, Franklin carried out research into coal and graphite that proved important for gas-masks, the PPE of that time.
    • It is because of Franklin, her collaborators and successors, that today’s researchers are able to use tools such as DNA sequencing and X-ray crystallography to investigate viruses such as COVID-10.

    Back2Basics: DNA/RNA 

    • Deoxyribonucleic acid (DNA) and Ribonucleic acid (RNA) are perhaps the most important molecules in cell biology, responsible for the storage and reading of genetic information that underpins all life.
    • They are both linear polymers, consisting of sugars, phosphates and bases, but there are some key differences which separate the two.
    • These distinctions enable the two molecules to work together and fulfil their essential roles.
    • DNA encodes all genetic information and is the blueprint from which all biological life is created. And that’s only in the short-term.
    • In the long-term, DNA is a storage device, a biological flash drive that allows the blueprint of life to be passed between generations.
    • RNA functions as the reader that decodes this flash drive. This reading process is multi-step and there are specialized RNAs for each of these steps.

    Three types of RNA

    • Messenger RNA (mRNA) copies portions of genetic code; a process called transcription and transports these copies to ribosomes, which are the cellular factories that facilitate the production of proteins from this code.
    • Transfer RNA (tRNA) is responsible for bringing amino acids, basic protein building blocks, to these protein factories, in response to the coded instructions introduced by the mRNA. This protein-building process is called translation.
    • Finally, Ribosomal RNA (rRNA) is a component of the ribosome factory itself without which protein production would not occur.
  • [pib] Kakrapar Atomic Power Project (KAPP-3) in Gujarat

    The indigenously designed 700 MWe reactor at the Kakrapar Atomic Power Project has achieved Criticality.

    Try this PYQ from CSP 2013:

    Q. The known forces of nature can be divided into four classes, viz, gravity, electromagnetism, weak nuclear force and strong nuclear force. With reference to them, which one of the following statements is not correct?

    (a) Gravity is the strongest of the four

    (b) Electromagnetism act only on particles with an electric charge

    (c) Weak nuclear force causes radioactivity

    (d) Strong nuclear force holds protons and neutrons inside the nuclear of an atom.

    What is ‘Criticality’ in Atomic/Nuclear Power Plants?

    • Reactors are the heart of an atomic power plant, where a controlled nuclear fission reaction takes place that produces heat, which is used to generate steam that then spins a turbine to create electricity.
    • Fission is a process in which the nucleus of an atom splits into two or smaller nuclei, and usually some by-product particles.
    • When the nucleus splits, the kinetic energy of the fission fragments is transferred to other atoms in the fuel as heat energy, which is eventually used to produce steam to drive the turbines.
    • For every fission event, if at least one of the emitted neutrons on average causes fission, a self-sustaining chain reaction will take place.
    • A nuclear reactor achieves criticality when each fission event releases a sufficient number of neutrons to sustain an ongoing series of reactions.

    Controlling Criticality

    • When a reactor is starting up, the number of neutrons is increased slowly in a controlled manner. Neutron-absorbing control rods in the reactor core are used to calibrate neutron production.
    • The control rods are made from neutron-absorbing elements such as cadmium, boron, or hafnium.
    • The deeper the rods are lowered into the reactor core, the more neutrons the rods absorb and the less fission occurs.
    • Technicians pull up or lower down the control rods into the reactor core depending on whether more or less fission, neutron production, and power are desired.
    • If a malfunction occurs, technicians can remotely plunge control rods into the reactor core to quickly soak up neutrons and shut down the nuclear reaction.

    Why is this achievement significant?

    • It is the biggest indigenously developed variant of the Pressurized Heavy Water Reactor (PHWR).
    • The PHWRs, which use natural uranium as fuel and heavy water as moderator, is the mainstay of India’s nuclear reactor fleet.
    • Until now, the biggest reactor size of the indigenous design was the 540 MWe PHWR, two of which have been deployed in Tarapur, Maharashtra.
    • India works to ramp up its existing nuclear power capacity of 6,780 MWe to 22,480 MWe by 2031.
    • The 700MWe capacity constitutes the biggest component of the expansion plan.

    Back2Basics: India’s PHWR technology

    • PHWR technology started in India in the late 1960s with the construction of the first 220 MWe reactor, Rajasthan Atomic Power Station, RAPS-1 under the joint Indo-Canadian nuclear co-operation.
    • Canada supplied all the main equipment for this first unit, while India retained responsibility for construction, installation, and commissioning.
    • For the second unit (RAPS-2), import content was reduced considerably, and indigenization was undertaken for major equipment.
    • Following the withdrawal of Canadian support in 1974 after Pokhran-1, Indian nuclear engineers completed the construction, and the plant was made operational with a majority of components being made in India.